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    Psmc3ip PSMC3 interacting protein [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100719118, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Psmc3ip
    Gene description
    PSMC3 interacting protein
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Psmc3ip in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947489.1 (94400886..94411857, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176366.1 (12297589..12300550, complement)

    NW_026947489.1Genomic Context describing neighboring genes Neighboring gene N-acetyl-alpha-glucosaminidase Neighboring gene hydroxysteroid 17-beta dehydrogenase 1 Neighboring gene Coenzyme A synthase Neighboring gene MAX dimerization protein MLX Neighboring gene reticulophagy regulator family member 3 Neighboring gene tubulin gamma 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables recombinase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homologous chromosome pairing at meiosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic joint molecule formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meiotic strand invasion involved in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DNA recombinase auxiliary factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in condensed nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homologous-pairing protein 2 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947489.1 Reference mCavPor4.1

      Range
      94400886..94411857 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063251594.1 → XP_063107664.1  homologous-pairing protein 2 homolog isoform X2

    2. XM_063251593.1 → XP_063107663.1  homologous-pairing protein 2 homolog isoform X1

    3. XM_003466993.5 → XP_003467041.2  homologous-pairing protein 2 homolog isoform X4

      Conserved Domains (1) summary
      pfam07106
      Location:116 → 281
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)

    4. XM_013149679.3 → XP_013005133.1  homologous-pairing protein 2 homolog isoform X3

      Conserved Domains (1) summary
      pfam07106
      Location:116 → 279
      TBPIP; Tat binding protein 1(TBP-1)-interacting protein (TBPIP)
    Nucleotide Protein
    Heading Accession and Version

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