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    Kpna5 karyopherin subunit alpha 5 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100718275, updated on 3-Apr-2024

    Summary

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    Gene symbol
    Kpna5
    Gene description
    karyopherin subunit alpha 5
    See related
    Ensembl:ENSCPOG00000035973
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human all
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    Genomic context

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    See Kpna5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947507.1 (48687230..48767899)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176418.1 (72162336..72236358)

    NW_026947507.1Genomic Context describing neighboring genes Neighboring gene zinc finger containing ubiquitin peptidase 1 Neighboring gene radial spoke head component 4A Neighboring gene family with sequence similarity 162 member B Neighboring gene G protein-coupled receptor class C group 6 member A Neighboring gene E3 ubiquitin-protein ligase RNFT1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear import signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear localization sequence binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in NLS-bearing protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    importin subunit alpha-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947507.1 Reference mCavPor4.1

      Range
      48687230..48767899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005008136.4 → XP_005008193.1  importin subunit alpha-6 isoform X1

      UniProtKB/TrEMBL
      A0A286Y281
      Related
      ENSCPOP00000031645.1
      Conserved Domains (2) summary
      sd00043
      Location:330 → 362
      ARM; armadillo repeat [structural motif]
      cl25709
      Location:9 → 513
      Arm_3; Atypical Arm repeat

    2. XM_063235025.1 → XP_063091095.1  importin subunit alpha-6 isoform X1

      UniProtKB/TrEMBL
      A0A286Y281

    3. XM_063235026.1 → XP_063091096.1  importin subunit alpha-6 isoform X2

    4. XM_063235027.1 → XP_063091097.1  importin subunit alpha-6 isoform X1

      UniProtKB/TrEMBL
      A0A286Y281

    RNA

    1. XR_010042718.1 RNA Sequence

    2. XR_010042715.1 RNA Sequence

    3. XR_010042716.1 RNA Sequence

    4. XR_010042717.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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