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    Cpne6 copine 6 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100717208, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Cpne6
    Gene description
    copine 6
    See related
    Ensembl:ENSCPOG00000003506
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Cpne6 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947509.1 (21254634..21261224, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176406.1 (16754769..16761194, complement)

    NW_026947509.1Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 11 Neighboring gene phosphoenolpyruvate carboxykinase 2, mitochondrial Neighboring gene neural retina leucine zipper Neighboring gene capping protein regulator and myosin 1 linker 3 Neighboring gene dehydrogenase/reductase SDR family member 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to calcium ion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    copine-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947509.1 Reference mCavPor4.1

      Range
      21254634..21261224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013157769.3 → XP_013013223.1  copine-6

      See identical proteins and their annotated locations for XP_013013223.1

      UniProtKB/TrEMBL
      H0V113
      Related
      ENSCPOP00000003169.2
      Conserved Domains (3) summary
      cd04047
      Location:152 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:20 → 137
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:325 → 541
      Copine; Copine

    2. XM_013157770.3 → XP_013013224.1  copine-6

      See identical proteins and their annotated locations for XP_013013224.1

      UniProtKB/TrEMBL
      H0V113
      Conserved Domains (3) summary
      cd04047
      Location:152 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:20 → 137
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:325 → 541
      Copine; Copine

    3. XM_013157771.3 → XP_013013225.1  copine-6

      See identical proteins and their annotated locations for XP_013013225.1

      UniProtKB/TrEMBL
      H0V113
      Conserved Domains (3) summary
      cd04047
      Location:152 → 266
      C2B_Copine; C2 domain second repeat in Copine
      cd04048
      Location:20 → 137
      C2A_Copine; C2 domain first repeat in Copine
      pfam07002
      Location:325 → 541
      Copine; Copine
    Nucleotide Protein
    Heading Accession and Version

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