U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Ubr1 ubiquitin protein ligase E3 component n-recognin 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100715624, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Ubr1
    Gene description
    ubiquitin protein ligase E3 component n-recognin 1
    See related
    Ensembl:ENSCPOG00000009629
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Ubr1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    47
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947489.1 (27494096..27667820)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176409.1 (28382273..28555338, complement)

    NW_026947489.1Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase subunit G 1-like Neighboring gene cyclin D1 binding protein 1 Neighboring gene transmembrane protein 62 Neighboring gene small ribosomal subunit protein uS2-like Neighboring gene U8 small nucleolar RNA Neighboring gene proteasome subunit alpha type-6-like Neighboring gene tau tubulin kinase 2 Neighboring gene cytochrome c oxidase assembly protein COX18, mitochondrial-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process via the N-end rule pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    E3 ubiquitin-protein ligase UBR1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947489.1 Reference mCavPor4.1

      Range
      27494096..27667820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063249551.1 → XP_063105621.1  E3 ubiquitin-protein ligase UBR1 isoform X2

    2. XM_003475450.5 → XP_003475498.2  E3 ubiquitin-protein ligase UBR1 isoform X1

      UniProtKB/TrEMBL
      H0VF20
      Related
      ENSCPOP00000008643.3
      Conserved Domains (2) summary
      pfam02207
      Location:99 → 166
      zf-UBR; Putative zinc finger in N-recognin (UBR box)
      pfam02617
      Location:221 → 301
      ClpS; ATP-dependent Clp protease adaptor protein ClpS
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials