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    Krt5 keratin 5 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100715346, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Krt5
    Gene description
    keratin 5
    See related
    Ensembl:ENSCPOG00000035875
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Krt5 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947491.1 (43943398..43949083, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176410.1 (47235851..47241539)

    NW_026947491.1Genomic Context describing neighboring genes Neighboring gene keratin, type II cytoskeletal 6A-like Neighboring gene keratin 6A Neighboring gene keratin 71 Neighboring gene keratin 74

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of skin epidermis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intermediate filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in keratinization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in keratin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    keratin, type II cytoskeletal 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947491.1 Reference mCavPor4.1

      Range
      43943398..43949083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003476282.4 → XP_003476330.1  keratin, type II cytoskeletal 5

      UniProtKB/TrEMBL
      A0A286X8W5
      Related
      ENSCPOP00000021871.1
      Conserved Domains (3) summary
      pfam00038
      Location:165 → 478
      Filament; Intermediate filament protein
      pfam16208
      Location:16 → 162
      Keratin_2_head; Keratin type II head
      cl01888
      Location:391 → 451
      DUF883; Bacterial protein of unknown function (DUF883)
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials