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    Agfg1 ArfGAP with FG repeats 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100715254, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Agfg1
    Gene description
    ArfGAP with FG repeats 1
    See related
    Ensembl:ENSCPOG00000001288
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Agfg1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947509.1 (37419145..37476738, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176406.1 (32798471..32857352, complement)

    NW_026947509.1Genomic Context describing neighboring genes Neighboring gene U6atac minor spliceosomal RNA Neighboring gene small cysteine and glycine repeat-containing protein 5-like Neighboring gene uncharacterized LOC134473143 Neighboring gene uncharacterized LOC134473144

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in acrosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intermediate filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatid nucleus differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arf-GAP domain and FG repeat-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947509.1 Reference mCavPor4.1

      Range
      37419145..37476738 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003474614.5 → XP_003474662.1  arf-GAP domain and FG repeat-containing protein 1 isoform X8

      UniProtKB/TrEMBL
      H0UVW2
      Conserved Domains (1) summary
      smart00105
      Location:14 → 135
      ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF

    2. XM_013157655.3 → XP_013013109.1  arf-GAP domain and FG repeat-containing protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A286XQ78
      Related
      ENSCPOP00000027683.1
      Conserved Domains (1) summary
      smart00105
      Location:14 → 135
      ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF

    3. XM_003474612.5 → XP_003474660.1  arf-GAP domain and FG repeat-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A286XWM0, H0UVW2
      Related
      ENSCPOP00000029684.1
      Conserved Domains (1) summary
      smart00105
      Location:14 → 135
      ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF

    4. XM_013157654.3 → XP_013013108.1  arf-GAP domain and FG repeat-containing protein 1 isoform X5

      UniProtKB/TrEMBL
      H0UVW2
      Conserved Domains (1) summary
      smart00105
      Location:14 → 135
      ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF

    5. XM_063237217.1 → XP_063093287.1  arf-GAP domain and FG repeat-containing protein 1 isoform X4

    6. XM_013157652.3 → XP_013013106.1  arf-GAP domain and FG repeat-containing protein 1 isoform X2

      Conserved Domains (2) summary
      smart00105
      Location:14 → 135
      ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF
      COG5347
      Location:8 → 319
      COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

    7. XM_013157653.3 → XP_013013107.1  arf-GAP domain and FG repeat-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A286XYS8
      Related
      ENSCPOP00000030488.1
      Conserved Domains (2) summary
      smart00105
      Location:14 → 135
      ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF
      COG5347
      Location:8 → 319
      COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

    8. XM_013157651.3 → XP_013013105.1  arf-GAP domain and FG repeat-containing protein 1 isoform X1

      Conserved Domains (2) summary
      smart00105
      Location:14 → 135
      ArfGap; Putative GTP-ase activating proteins for the small GTPase, ARF
      COG5347
      Location:8 → 319
      COG5347; GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]
    Nucleotide Protein
    Heading Accession and Version

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