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    Selenos selenoprotein S [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100713682, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Selenos
    Gene description
    selenoprotein S
    See related
    Ensembl:ENSCPOG00000022558
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Also known as
    Vimp
    Orthologs
    human mouse all
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    Genomic context

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    See Selenos in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947489.1 (8836723..8844557)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176409.1 (47208346..47216262, complement)

    NW_026947489.1Genomic Context describing neighboring genes Neighboring gene proprotein convertase subtilisin/kexin type 6 Neighboring gene small nuclear ribonucleoprotein polypeptide A' Neighboring gene U6 spliceosomal RNA Neighboring gene chondroitin sulfate synthase 1 Neighboring gene uncharacterized LOC106028896 Neighboring gene leucine rich repeat kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde protein transport, ER to cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Derlin-1 retrotranslocation complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of Derlin-1-VIMP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    selenoprotein S
    Names
    VCP interacting membrane selenoprotein
    VCP-interacting membrane protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947489.1 Reference mCavPor4.1

      Range
      8836723..8844557
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003475277.5 → XP_003475325.1  selenoprotein S

      UniProtKB/TrEMBL
      H0W325
      Related
      ENSCPOP00000017370.1
      Conserved Domains (1) summary
      pfam06936
      Location:1 → 189
      Selenoprotein_S; Selenoprotein S (SelS)
    Nucleotide Protein
    Heading Accession and Version

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