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    Rad51b RAD51 paralog B [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100713111, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Rad51b
    Gene description
    RAD51 paralog B
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Rad51b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947514.1 (33162228..33731817, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176399.1 (12532401..13105787)

    NW_026947514.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106028208 Neighboring gene uncharacterized LOC106028207 Neighboring gene uncharacterized LOC134474217 Neighboring gene dnaJ homolog subfamily A member 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene small nucleolar RNA SNORA2/SNORA34 family Neighboring gene large ribosomal subunit protein eL33-like Neighboring gene biorientation of chromosomes in cell division protein 1-like Neighboring gene U6 spliceosomal RNA Neighboring gene Y+L amino acid transporter 2-like Neighboring gene immunoglobulin-binding protein 1-like Neighboring gene small Cajal body-specific RNA 11 Neighboring gene non-histone chromosomal protein HMG-14-like Neighboring gene zinc finger FYVE-type containing 26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent DNA damage sensor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables four-way junction DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Rad51B-Rad51C-Rad51D-XRCC2 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in replication fork IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA repair protein RAD51 homolog 2
    Names
    RAD51 homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947514.1 Reference mCavPor4.1

      Range
      33162228..33731817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063241557.1 → XP_063097627.1  DNA repair protein RAD51 homolog 2 isoform X4

    2. XM_003472290.5 → XP_003472338.2  DNA repair protein RAD51 homolog 2 isoform X2

      See identical proteins and their annotated locations for XP_003472338.2

      Conserved Domains (1) summary
      cd01123
      Location:83 → 343
      Rad51_DMC1_radA; Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a ...

    3. XM_063241556.1 → XP_063097626.1  DNA repair protein RAD51 homolog 2 isoform X3

    4. XM_063241555.1 → XP_063097625.1  DNA repair protein RAD51 homolog 2 isoform X1

    5. XM_063241554.1 → XP_063097624.1  DNA repair protein RAD51 homolog 2 isoform X1

    6. XM_063241561.1 → XP_063097631.1  DNA repair protein RAD51 homolog 2 isoform X1

    7. XM_063241552.1 → XP_063097622.1  DNA repair protein RAD51 homolog 2 isoform X1

    8. XM_063241558.1 → XP_063097628.1  DNA repair protein RAD51 homolog 2 isoform X5

    9. XM_063241560.1 → XP_063097630.1  DNA repair protein RAD51 homolog 2 isoform X7

    10. XM_063241559.1 → XP_063097629.1  DNA repair protein RAD51 homolog 2 isoform X6

    RNA

    1. XR_010044997.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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