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    NDC1 NDC1 transmembrane nucleoporin [ Canis lupus familiaris (dog) ]

    Gene ID: 100684187, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NDC1provided by VGNC
    Official Full Name
    NDC1 transmembrane nucleoporinprovided by VGNC
    Primary source
    VGNC:VGNC:43669
    See related
    Ensembl:ENSCAFG00845015794
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    TMEM48
    Orthologs
    human mouse all
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    Genomic context

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    See NDC1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (55349204..55396311)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (55227519..55274615)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (55622932..55669936)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (55343295..55390284)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (55233538..55280629)

    Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene iodothyronine deiodinase 1 Neighboring gene Yip1 domain family member 1 Neighboring gene uncharacterized LOC119871885 Neighboring gene GLIS family zinc finger 1 Neighboring gene proline-rich protein 3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-macromolecule adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear pore organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pore transmembrane ring IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nucleoporin NDC1; LOW QUALITY PROTEIN: nucleoporin NDC1
    Names
    transmembrane protein 48

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051809.1 Reference ROS_Cfam_1.0

      Range
      55349204..55396311
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038666199.1 → XP_038522127.1  nucleoporin NDC1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8, A0A8I3P2N5, A0A8P0NKF3
      Related
      ENSCAFP00845022126.1, ENSCAFT00845028120.1
      Conserved Domains (1) summary
      pfam09531
      Location:20 → 667
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    2. XM_038666198.1 → XP_038522126.1  nucleoporin NDC1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8
      Conserved Domains (1) summary
      pfam09531
      Location:49 → 683
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    3. XM_038666197.1 → XP_038522125.1  nucleoporin NDC1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8, A0A8I3NV53, A0A8P0SMQ5
      Related
      ENSCAFP00845022165.1, ENSCAFT00845028173.1
      Conserved Domains (1) summary
      pfam09531
      Location:49 → 696
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049265.1 Alternate UMICH_Zoey_3.1

      Range
      55343295..55390284
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038476317.1 → XP_038332245.1  LOW QUALITY PROTEIN: nucleoporin NDC1 isoform X3

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

      Range
      55233538..55280629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038601631.1 → XP_038457559.1  nucleoporin NDC1 isoform X3

      Conserved Domains (1) summary
      pfam09531
      Location:20 → 667
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    2. XM_038601630.1 → XP_038457558.1  nucleoporin NDC1 isoform X2

      Conserved Domains (1) summary
      pfam09531
      Location:49 → 683
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    3. XM_038601629.1 → XP_038457557.1  nucleoporin NDC1 isoform X1

      Conserved Domains (1) summary
      pfam09531
      Location:49 → 696
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

      Range
      55622932..55669936
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038537489.1 → XP_038393417.1  nucleoporin NDC1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8, A0A8I3P2N5, A0A8P0NKF3
      Conserved Domains (1) summary
      pfam09531
      Location:20 → 667
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    2. XM_038537488.1 → XP_038393416.1  nucleoporin NDC1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8
      Conserved Domains (1) summary
      pfam09531
      Location:49 → 683
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    3. XM_038537486.1 → XP_038393414.1  nucleoporin NDC1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8, A0A8I3NV53, A0A8P0SMQ5
      Conserved Domains (1) summary
      pfam09531
      Location:49 → 696
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      55227519..55274615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003434658.5 → XP_003434706.1  nucleoporin NDC1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8, A0A8I3P2N5, A0A8P0NKF3
      Conserved Domains (1) summary
      pfam09531
      Location:20 → 667
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    2. XM_038521002.1 → XP_038376930.1  nucleoporin NDC1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8
      Conserved Domains (1) summary
      pfam09531
      Location:49 → 683
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup

    3. XM_014113771.3 → XP_013969246.1  nucleoporin NDC1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0M8Q9, A0A8C0PWA8, A0A8I3NV53, A0A8P0SMQ5
      Conserved Domains (1) summary
      pfam09531
      Location:49 → 696
      Ndc1_Nup; Nucleoporin protein Ndc1-Nup
    Nucleotide Protein
    Heading Accession and Version

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