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    GALNT2 polypeptide N-acetylgalactosaminyltransferase 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 100682763, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GALNT2provided by VGNC
    Official Full Name
    polypeptide N-acetylgalactosaminyltransferase 2provided by VGNC
    Primary source
    VGNC:VGNC:41094
    See related
    Ensembl:ENSCAFG00845001196
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See GALNT2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (9079878..9271142, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (9047537..9238587, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (9433272..9624403, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (9090715..9281701, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (9205484..9396350, complement)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111095696 Neighboring gene piggyBac transposable element derived 5 Neighboring gene uncharacterized LOC119871446 Neighboring gene uncharacterized LOC102152185 Neighboring gene uncharacterized LOC119871613 Neighboring gene 40S ribosomal protein S15a-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase 2; LOW QUALITY PROTEIN: polypeptide N-acetylgalactosaminyltransferase 2
    Names
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2)
    XP_005618892.1
    XP_038328845.1
    XP_038344366.1
    XP_038344383.1
    XP_038389868.1
    XP_038389869.1
    XP_038389870.1
    XP_038454187.1
    XP_038454188.1
    XP_038454189.1
    XP_038518494.1
    XP_038518495.1
    XP_038518496.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      9079878..9271142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038662566.1 → XP_038518494.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0N9H6, A0A8C0PZI4, A0A8C0R8X9, A0A8I3MY69
      Related
      ENSCAFP00845001616.1, ENSCAFT00845002066.1
      Conserved Domains (2) summary
      cd02510
      Location:139 → 434
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:446 → 563
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_038662567.1 → XP_038518495.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8I3MDW5, A0A8I3MHQ8, A0A8P0NU19, A0A8P0TEI7
      Related
      ENSCAFP00845001646.1, ENSCAFT00845002101.1
      Conserved Domains (2) summary
      cd02510
      Location:120 → 415
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:427 → 544
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    3. XM_038662568.1 → XP_038518496.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LNU2
      Related
      ENSCAFP00845001626.1, ENSCAFT00845002077.1
      Conserved Domains (2) summary
      cd02510
      Location:72 → 367
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:379 → 496
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      9090715..9281701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038472917.1 → XP_038328845.1  LOW QUALITY PROTEIN: polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      9205484..9396350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038598259.1 → XP_038454187.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

      Conserved Domains (2) summary
      cd02510
      Location:139 → 434
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:446 → 563
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_038598260.1 → XP_038454188.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

      Conserved Domains (2) summary
      cd02510
      Location:120 → 415
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:427 → 544
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    3. XM_038598261.1 → XP_038454189.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X3

      Conserved Domains (2) summary
      cd02510
      Location:72 → 367
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:379 → 496
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      9433272..9624403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038533940.1 → XP_038389868.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0N9H6, A0A8C0PZI4, A0A8C0R8X9, A0A8I3MY69
      Conserved Domains (2) summary
      cd02510
      Location:139 → 434
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:446 → 563
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_038533941.1 → XP_038389869.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8I3MDW5, A0A8I3MHQ8, A0A8P0NU19, A0A8P0TEI7
      Conserved Domains (2) summary
      cd02510
      Location:120 → 415
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:427 → 544
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    3. XM_038533942.1 → XP_038389870.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LNU2
      Conserved Domains (2) summary
      cd02510
      Location:72 → 367
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:379 → 496
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      9047537..9238587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038488438.1 → XP_038344366.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8C0N9H6, A0A8C0PZI4, A0A8C0R8X9, A0A8I3MY69
      Conserved Domains (2) summary
      cd02510
      Location:139 → 434
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:446 → 563
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_005618835.2 → XP_005618892.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8I3MDW5, A0A8I3MHQ8, A0A8P0NU19, A0A8P0TEI7
      Conserved Domains (2) summary
      cd02510
      Location:120 → 415
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:427 → 544
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    3. XM_038488455.1 → XP_038344383.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X3

      UniProtKB/TrEMBL
      A0A8C0LNU2
      Conserved Domains (2) summary
      cd02510
      Location:72 → 367
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:379 → 496
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    Nucleotide Protein
    Heading Accession and Version

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