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    SCT secretin [ Equus caballus (horse) ]

    Gene ID: 100630455, updated on 15-Aug-2024

    Summary

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    Gene symbol
    SCT
    Gene description
    secretin
    See related
    Ensembl:ENSECAG00000056522
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See SCT in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 12 NC_009155.3 (35645035..35663131, complement)

    Chromosome 12 - NC_009155.3Genomic Context describing neighboring genes Neighboring gene interferon regulatory factor 7 Neighboring gene cadherin related family member 5 Neighboring gene dopamine receptor D4 Neighboring gene DEAF1 transcription factor Neighboring gene transmembrane protein 80

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009155.3 Chromosome 12 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hormone activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of gastrin-induced gastric acid secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of pancreatic juice secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of somatostatin secretion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    secretin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009155.3 Reference EquCab3.0 Primary Assembly

      Range
      35645035..35663131 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023654758.1 → XP_023510526.1  secretin isoform X1

      Conserved Domains (1) summary
      smart00070
      Location:24 → 50
      GLUCA; Glucagon like hormones

    2. XM_023654760.1 → XP_023510528.1  secretin isoform X2

      UniProtKB/TrEMBL
      A0A9L0SBM1
      Related
      ENSECAP00000072242.1, ENSECAT00000082372.1
      Conserved Domains (1) summary
      smart00070
      Location:27 → 53
      GLUCA; Glucagon like hormones
    Nucleotide Protein
    Heading Accession and Version

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