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    HMGN1 high mobility group nucleosome binding domain 1 [ Equus caballus (horse) ]

    Gene ID: 100629274, updated on 15-Aug-2024

    Summary

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    Gene symbol
    HMGN1
    Gene description
    high mobility group nucleosome binding domain 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See HMGN1 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 26 NC_009169.3 (36617728..36624129, complement)

    Chromosome 26 - NC_009169.3Genomic Context describing neighboring genes Neighboring gene proteasome assembly chaperone 1 Neighboring gene uncharacterized LOC111770816 Neighboring gene bromodomain and WD repeat domain containing 1 Neighboring gene guided entry of tail-anchored proteins factor 1 Neighboring gene lebercilin LCA5 like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009169.3 Chromosome 26 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleosomal DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-histone chromosomal protein HMG-14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009169.3 Reference EquCab3.0 Primary Assembly

      Range
      36617728..36624129 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023630168.1 → XP_023485936.1  non-histone chromosomal protein HMG-14

      Conserved Domains (1) summary
      pfam01101
      Location:1 → 95
      HMG14_17; HMG14 and HMG17
    Nucleotide Protein
    Heading Accession and Version

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