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    HAPLN2 hyaluronan and proteoglycan link protein 2 [ Sus scrofa (pig) ]

    Gene ID: 100628124, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HAPLN2provided by VGNC
    Official Full Name
    hyaluronan and proteoglycan link protein 2provided by VGNC
    Primary source
    VGNC:VGNC:88781
    See related
    Ensembl:ENSSSCG00000006478
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human mouse all
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    Genomic context

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    See HAPLN2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (93462306..93468394, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (102125801..102128123, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene nestin Neighboring gene brevican Neighboring gene G-patch domain containing 4 Neighboring gene NAD(P)HX epimerase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hyaluronic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    hyaluronan and proteoglycan link protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      93462306..93468394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003355142.5 → XP_003355190.2  hyaluronan and proteoglycan link protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A4X1VXX6, A0A8D0I2B0, F1RP37
      Related
      ENSSSCP00000006903.3, ENSSSCT00000007095.3
      Conserved Domains (4) summary
      smart00410
      Location:49 → 145
      IG_like; Immunoglobulin like
      cd03518
      Location:149 → 242
      Link_domain_HAPLN_module_1; Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding ...
      cd03519
      Location:251 → 338
      Link_domain_HAPLN_module_2; Link_domain_HAPLN_module_2; this link domain is found in the second link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a ...
      cl11960
      Location:50 → 150
      Ig; Immunoglobulin domain

    2. XM_021089668.1 → XP_020945327.1  hyaluronan and proteoglycan link protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A4X1VXW9, A0A8D0VTH3, A0A8D1J1C3
      Conserved Domains (2) summary
      cd03518
      Location:149 → 242
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cl11960
      Location:50 → 150
      Ig; Immunoglobulin domain

    3. XM_021089669.1 → XP_020945328.1  hyaluronan and proteoglycan link protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A4X1VXW9, A0A8D0VTH3, A0A8D1J1C3
      Conserved Domains (2) summary
      cd03518
      Location:149 → 242
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cl11960
      Location:50 → 150
      Ig; Immunoglobulin domain

    4. XM_021089667.1 → XP_020945326.1  hyaluronan and proteoglycan link protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A4X1VXW9, A0A8D0VTH3, A0A8D1J1C3
      Conserved Domains (2) summary
      cd03518
      Location:149 → 242
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cl11960
      Location:50 → 150
      Ig; Immunoglobulin domain

    5. XM_021089666.1 → XP_020945325.1  hyaluronan and proteoglycan link protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A4X1VXW9, A0A8D0VTH3, A0A8D1J1C3
      Conserved Domains (2) summary
      cd03518
      Location:149 → 242
      Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two ...
      cl11960
      Location:50 → 150
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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