U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SLC38A5 solute carrier family 38 member 5 [ Sus scrofa (pig) ]

    Gene ID: 100627516, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SLC38A5provided by VGNC
    Official Full Name
    solute carrier family 38 member 5provided by VGNC
    Primary source
    VGNC:VGNC:93097
    See related
    Ensembl:ENSSSCG00000025981
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in ovary (RPKM 6.4), subcutaneous adipose (RPKM 4.3) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SLC38A5 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (42590608..42601537, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (47547735..47558567, complement)

    Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene retinol dehydrogenase 12-like Neighboring gene protein SSX1-like Neighboring gene FtsJ RNA 2'-O-methyltransferase 1 Neighboring gene porcupine O-acyltransferase

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Porcine gene discovery by normalized cDNA-library sequencing and EST cluster assembly. Fahrenkrug SC, et al. Mamm Genome, 2002 Aug. PMID 12226715
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-glutamine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glycine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-histidine transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glutamine transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glycine transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in serine transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    sodium-coupled neutral amino acid transporter 5

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243482.1 → NP_001230411.1  sodium-coupled neutral amino acid transporter 5

      See identical proteins and their annotated locations for NP_001230411.1

      Status: VALIDATED

      Source sequence(s)
      BI360725, DB788027, DB807002
      UniProtKB/TrEMBL
      A0A287A1B5, A0A4X1SZR7, A0A8D1EB77, A0A8D2BWI8, I3LQM7
      Conserved Domains (1) summary
      cl00456
      Location:46 → 459
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

      Range
      42590608..42601537 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005657793.3 → XP_005657850.1  sodium-coupled neutral amino acid transporter 5 isoform X3

      See identical proteins and their annotated locations for XP_005657850.1

      UniProtKB/TrEMBL
      A0A287A1B5, A0A4X1SZR7, A0A8D1EB77, A0A8D2BWI8, I3LQM7
      Related
      ENSSSCP00000037512.3, ENSSSCT00000043556.3
      Conserved Domains (1) summary
      cl00456
      Location:46 → 459
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_021079482.1 → XP_020935141.1  sodium-coupled neutral amino acid transporter 5 isoform X2

      UniProtKB/TrEMBL
      A0A8D0XDJ2
      Conserved Domains (1) summary
      cl00456
      Location:54 → 467
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_021079481.1 → XP_020935140.1  sodium-coupled neutral amino acid transporter 5 isoform X1

      UniProtKB/TrEMBL
      A0A8D0XDJ2, A0A8D2CJA4
      Conserved Domains (1) summary
      cl00456
      Location:55 → 468
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    4. XM_021079484.1 → XP_020935143.1  sodium-coupled neutral amino acid transporter 5 isoform X3

      UniProtKB/TrEMBL
      A0A287A1B5, A0A4X1SZR7, A0A8D1EB77, A0A8D2BWI8, I3LQM7
      Conserved Domains (1) summary
      cl00456
      Location:46 → 459
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    5. XM_013990876.2 → XP_013846330.1  sodium-coupled neutral amino acid transporter 5 isoform X2

      UniProtKB/TrEMBL
      A0A8D0XDJ2
      Conserved Domains (1) summary
      cl00456
      Location:54 → 467
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    6. XM_005657794.3 → XP_005657851.1  sodium-coupled neutral amino acid transporter 5 isoform X3

      See identical proteins and their annotated locations for XP_005657851.1

      UniProtKB/TrEMBL
      A0A287A1B5, A0A4X1SZR7, A0A8D1EB77, A0A8D2BWI8, I3LQM7
      Conserved Domains (1) summary
      cl00456
      Location:46 → 459
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.