U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    BRINP1 BMP/retinoic acid inducible neural specific 1 [ Sus scrofa (pig) ]

    Gene ID: 100625235, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    BRINP1provided by VGNC
    Official Full Name
    BMP/retinoic acid inducible neural specific 1provided by VGNC
    Primary source
    VGNC:VGNC:85881
    See related
    Ensembl:ENSSSCG00000005504
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    DBC1
    Expression
    Biased expression in mixtures (RPKM 2.7) and ovary (RPKM 0.2) See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See BRINP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (259350359..259544604, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (291412563..291465430, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257084 Neighboring gene uncharacterized LOC110257087 Neighboring gene uncharacterized LOC106507017 Neighboring gene CDK5 regulatory subunit associated protein 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    BMP/retinoic acid-inducible neural-specific protein 1
    Names
    deleted in bladder cancer 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001315664.1 → NP_001302593.1  BMP/retinoic acid-inducible neural-specific protein 1 precursor

      Status: PROVISIONAL

      Source sequence(s)
      KF733442
      UniProtKB/TrEMBL
      V9VIB0
      Conserved Domains (1) summary
      smart00457
      Location:73 → 251
      MACPF; membrane-attack complex / perforin

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      259350359..259544604 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021077997.1 → XP_020933656.1  BMP/retinoic acid-inducible neural-specific protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1UST7, A0A4X1USU2, F1SMH8
      Conserved Domains (1) summary
      smart00457
      Location:73 → 251
      MACPF; membrane-attack complex / perforin

    2. XM_021078073.1 → XP_020933732.1  BMP/retinoic acid-inducible neural-specific protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1UST7, A0A4X1USU2, F1SMH8
      Related
      ENSSSCP00000005899.3, ENSSSCT00000006053.4
      Conserved Domains (1) summary
      smart00457
      Location:73 → 251
      MACPF; membrane-attack complex / perforin

    3. XM_021078035.1 → XP_020933694.1  BMP/retinoic acid-inducible neural-specific protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1UST7, A0A4X1USU2, F1SMH8
      Conserved Domains (1) summary
      smart00457
      Location:73 → 251
      MACPF; membrane-attack complex / perforin
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.