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    STOML2 stomatin like 2 [ Sus scrofa (pig) ]

    Gene ID: 100625031, updated on 17-Aug-2024

    Summary

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    Official Symbol
    STOML2provided by VGNC
    Official Full Name
    stomatin like 2provided by VGNC
    Primary source
    VGNC:VGNC:93567
    See related
    Ensembl:ENSSSCG00000039782
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 46.0), heart (RPKM 43.3) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See STOML2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (235891479..235894944, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (263416861..263420324, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene FA complementation group G Neighboring gene phosphatidylinositol glycan anchor biosynthesis class O Neighboring gene atos homolog B Neighboring gene unc-13 homolog B Neighboring gene 40S ribosomal protein SA pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stomatin-like protein 2, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      235891479..235894944 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013986316.2 → XP_013841770.2  stomatin-like protein 2, mitochondrial

      UniProtKB/TrEMBL
      A0A286ZSD7, A0A4X1VU90, A0A4X1W169, A0A5G2RC13, A0A8D0XGQ3, A0A8D1LTP0
      Related
      ENSSSCP00000034386.1, ENSSSCT00000061791.2
      Conserved Domains (2) summary
      COG0330
      Location:41 → 314
      HflC; Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational modification, protein turnover, chaperones]
      cd08829
      Location:74 → 184
      SPFH_paraslipin; Paraslipin or slipin-2 (SLP-2, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
    Nucleotide Protein
    Heading Accession and Version

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