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    STX18 syntaxin 18 [ Sus scrofa (pig) ]

    Gene ID: 100624091, updated on 17-Aug-2024

    Summary

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    Official Symbol
    STX18provided by VGNC
    Official Full Name
    syntaxin 18provided by VGNC
    Primary source
    VGNC:VGNC:93588
    See related
    Ensembl:ENSSSCG00000038731
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 8.3), kidney (RPKM 2.8) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See STX18 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (5883653..6000944)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (5535778..5618100)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene msh homeobox 1 Neighboring gene uncharacterized LOC110262052 Neighboring gene uncharacterized LOC110262053 Neighboring gene uncharacterized LOC110262054 Neighboring gene neuronal vesicle trafficking associated 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    syntaxin-18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      5883653..6000944
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021100998.1 → XP_020956657.1  syntaxin-18 isoform X4

      UniProtKB/TrEMBL
      A0A8D0K330, A0A8D1EK34
      Conserved Domains (2) summary
      cd15850
      Location:191 → 249
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:2 → 41
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus

    2. XM_021100999.1 → XP_020956658.1  syntaxin-18 isoform X5

      UniProtKB/TrEMBL
      A0A8D0K330, A0A8D1EK34
      Conserved Domains (1) summary
      cd15850
      Location:165 → 223
      SNARE_syntaxin18; SNARE motif, subgroup Qa

    3. XM_021100996.1 → XP_020956655.1  syntaxin-18 isoform X2

      UniProtKB/TrEMBL
      A0A286ZVN3, A0A4X1SI98, A0A8D0LV73, A0A8D1EK40
      Related
      ENSSSCP00000020073.3, ENSSSCT00000026563.4
      Conserved Domains (2) summary
      cd15850
      Location:246 → 304
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:4 → 96
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus

    4. XM_021101003.1 → XP_020956662.1  syntaxin-18 isoform X5

      UniProtKB/TrEMBL
      A0A8D0K330, A0A8D1EK34
      Conserved Domains (1) summary
      cd15850
      Location:165 → 223
      SNARE_syntaxin18; SNARE motif, subgroup Qa

    5. XM_021100997.1 → XP_020956656.1  syntaxin-18 isoform X3

      UniProtKB/TrEMBL
      A0A4X1SIX2, A0A8D0K330, A0A8D1EK34
      Conserved Domains (2) summary
      cd15850
      Location:196 → 254
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:7 → 46
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus

    6. XM_021100995.1 → XP_020956654.1  syntaxin-18 isoform X1

      UniProtKB/TrEMBL
      A0A287BIE1, A0A4X1SI81, A0A8D0KBB6, A0A8D1P4G9
      Related
      ENSSSCP00000056371.1, ENSSSCT00000042436.2
      Conserved Domains (2) summary
      cd15850
      Location:252 → 310
      SNARE_syntaxin18; SNARE motif, subgroup Qa
      pfam10496
      Location:63 → 102
      Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus

    7. XM_021101002.1 → XP_020956661.1  syntaxin-18 isoform X5

      UniProtKB/TrEMBL
      A0A8D0K330, A0A8D1EK34
      Conserved Domains (1) summary
      cd15850
      Location:165 → 223
      SNARE_syntaxin18; SNARE motif, subgroup Qa

    8. XM_021101005.1 → XP_020956664.1  syntaxin-18 isoform X5

      UniProtKB/TrEMBL
      A0A8D0K330, A0A8D1EK34
      Conserved Domains (1) summary
      cd15850
      Location:165 → 223
      SNARE_syntaxin18; SNARE motif, subgroup Qa

    9. XM_021101006.1 → XP_020956665.1  syntaxin-18 isoform X5

      UniProtKB/TrEMBL
      A0A8D0K330, A0A8D1EK34
      Conserved Domains (1) summary
      cd15850
      Location:165 → 223
      SNARE_syntaxin18; SNARE motif, subgroup Qa

    10. XM_021101001.1 → XP_020956660.1  syntaxin-18 isoform X5

      UniProtKB/TrEMBL
      A0A8D0K330, A0A8D1EK34
      Conserved Domains (1) summary
      cd15850
      Location:165 → 223
      SNARE_syntaxin18; SNARE motif, subgroup Qa

    11. XM_021101000.1 → XP_020956659.1  syntaxin-18 isoform X5

      UniProtKB/TrEMBL
      A0A8D0K330, A0A8D1EK34
      Conserved Domains (1) summary
      cd15850
      Location:165 → 223
      SNARE_syntaxin18; SNARE motif, subgroup Qa
    Nucleotide Protein
    Heading Accession and Version

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