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    TMEM102 transmembrane protein 102 [ Sus scrofa (pig) ]

    Gene ID: 100623827, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TMEM102provided by VGNC
    Official Full Name
    transmembrane protein 102provided by VGNC
    Primary source
    VGNC:VGNC:94061
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 8.8), lung (RPKM 5.2) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See TMEM102 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (52738942..52749326)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (55011104..55013288, complement)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene tyrosine kinase non receptor 1 Neighboring gene phospholipid scramblase 3 Neighboring gene SPEM family member 2 Neighboring gene fibroblast growth factor 11 Neighboring gene cholinergic receptor nicotinic beta 1 subunit Neighboring gene zinc finger and BTB domain containing 4 Neighboring gene solute carrier family 35 member G6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: transmembrane protein 102

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      52738942..52749326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021067827.1 → XP_020923486.1  LOW QUALITY PROTEIN: transmembrane protein 102

      UniProtKB/TrEMBL
      A0A8D1DRD3
      Conserved Domains (1) summary
      pfam03281
      Location:320 → 462
      Mab-21; Mab-21 protein
    Nucleotide Protein
    Heading Accession and Version

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