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    SURF4 surfeit 4 [ Sus scrofa (pig) ]

    Gene ID: 100623620, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SURF4provided by VGNC
    Official Full Name
    surfeit 4provided by VGNC
    Primary source
    VGNC:VGNC:93631
    See related
    Ensembl:ENSSSCG00000040710
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 78.6), liver (RPKM 75.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SURF4 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (272975164..272988683, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003540996.1 (1081..4195, complement)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene mediator complex subunit 22 Neighboring gene ribosomal protein L7a Neighboring gene SURF1 cytochrome c oxidase assembly factor Neighboring gene surfeit 2 Neighboring gene serine/threonine kinase like domain containing 1 Neighboring gene REX4 homolog, 3'-5' exonuclease Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif 13 Neighboring gene calcium channel flower domain containing 1 Neighboring gene solute carrier family 2 member 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    surfeit locus protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      272975164..272988683 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021071128.1 → XP_020926787.1  surfeit locus protein 4

      UniProtKB/TrEMBL
      A0A0B8RZ29, A0A286ZQW5, A0A4X1T1H6, A0A8D1MB98
      Related
      ENSSSCP00000034019.1, ENSSSCT00000045824.2
      Conserved Domains (1) summary
      pfam02077
      Location:4 → 269
      SURF4; SURF4 family
    Nucleotide Protein Strain
    Heading Accession and Version

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