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    PKP1 plakophilin 1 [ Sus scrofa (pig) ]

    Gene ID: 100623590, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PKP1provided by VGNC
    Official Full Name
    plakophilin 1provided by VGNC
    Primary source
    VGNC:VGNC:96487
    See related
    Ensembl:ENSSSCG00000030694
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in subcutaneous adipose (RPKM 1.7), ovary (RPKM 0.8) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See PKP1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (23689394..23735457)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (28237387..28276472, complement)

    Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106507904 Neighboring gene immunoglobulin like and fibronectin type III domain containing 1 Neighboring gene troponin T2, cardiac type Neighboring gene ladinin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intermediate filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plakophilin-1
    Names
    plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

      Range
      23689394..23735457
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021064508.1 → XP_020920167.1  plakophilin-1

      UniProtKB/TrEMBL
      A0A4X1SJ26, A0A8D0VM23, A0A8D1AJX6, I3LGN8
      Related
      ENSSSCP00000033883.1, ENSSSCT00000038415.2
      Conserved Domains (3) summary
      smart00185
      Location:277 → 317
      ARM; Armadillo/beta-catenin-like repeats
      pfam00514
      Location:516 → 557
      Arm; Armadillo/beta-catenin-like repeat
      sd00043
      Location:240 → 273
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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