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    ECM1 extracellular matrix protein 1 [ Sus scrofa (pig) ]

    Gene ID: 100620701, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ECM1provided by VGNC
    Official Full Name
    extracellular matrix protein 1provided by VGNC
    Primary source
    VGNC:VGNC:87533
    See related
    Ensembl:ENSSSCG00000029230
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in subcutaneous adipose (RPKM 33.1), heart (RPKM 18.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ECM1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (98615776..98633081, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (107904906..107909543, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene MCL1 apoptosis regulator, BCL2 family member Neighboring gene ADAMTS like 4 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene regulation of nuclear pre-mRNA domain containing 2 Neighboring gene pre-mRNA processing factor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of bone mineralization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    extracellular matrix protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      98615776..98633081 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021089909.1 → XP_020945568.1  extracellular matrix protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A0B8RTR5, A0A287BHL7, A0A4X1SFR6, A0A8D0MB73
      Related
      ENSSSCP00000055856.1, ENSSSCT00000062882.3
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 541
      ECM1; Extracellular matrix protein 1 (ECM1)

    2. XM_021089911.1 → XP_020945570.1  extracellular matrix protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A0B8RSZ8, A0A4X1SFR1, A0A5G2Q6T9, A0A8D0M9Y8
      Related
      ENSSSCP00000059733.1, ENSSSCT00000070012.1
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 416
      ECM1; Extracellular matrix protein 1 (ECM1)

    3. XM_021089908.1 → XP_020945567.1  extracellular matrix protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8D0MB73
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 546
      ECM1; Extracellular matrix protein 1 (ECM1)

    4. XM_021089907.1 → XP_020945566.1  extracellular matrix protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A4X1SFT0, A0A8D0MAA6, I3LC64
      Related
      ENSSSCP00000021637.2, ENSSSCT00000030631.3
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 559
      ECM1; Extracellular matrix protein 1 (ECM1)

    5. XM_021089910.1 → XP_020945569.1  extracellular matrix protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A8D0M9Y8
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 439
      ECM1; Extracellular matrix protein 1 (ECM1)

    6. XM_021089906.1 → XP_020945565.1  extracellular matrix protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D0MB43, A0A8D1P2I9
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 564
      ECM1; Extracellular matrix protein 1 (ECM1)

    7. XM_021089905.1 → XP_020945564.1  extracellular matrix protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8D0M9K9, A0A8D1P569
      Conserved Domains (1) summary
      pfam05782
      Location:5 → 574
      ECM1; Extracellular matrix protein 1 (ECM1)
    Nucleotide Protein Strain
    Heading Accession and Version

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