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    NECAB3 N-terminal EF-hand calcium binding protein 3 [ Sus scrofa (pig) ]

    Gene ID: 100620656, updated on 17-Aug-2024

    Summary

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    Official Symbol
    NECAB3provided by VGNC
    Official Full Name
    N-terminal EF-hand calcium binding protein 3provided by VGNC
    Primary source
    VGNC:VGNC:95670
    See related
    Ensembl:ENSSSCG00000029626
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in ovary (RPKM 4.8), lung (RPKM 2.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See NECAB3 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 17 NC_010459.5 (37160431..37177272, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 17 NC_010459.4 (42101645..42116052, complement)

    Chromosome 17 - NC_010459.5Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S15a-like Neighboring gene CBFA2/RUNX1 partner transcriptional co-repressor 2 Neighboring gene ATP synthase subunit O, mitochondrial pseudogene Neighboring gene actin like 10 Neighboring gene E2F transcription factor 1 Neighboring gene peroxisomal membrane protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of amyloid precursor protein biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi cis cisterna IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    N-terminal EF-hand calcium-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010459.5 Reference Sscrofa11.1 Primary Assembly

      Range
      37160431..37177272 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021077361.1 → XP_020933020.1  N-terminal EF-hand calcium-binding protein 3

      UniProtKB/TrEMBL
      A0A4X1T365, A0A8D1MR59, I3LSK1
      Related
      ENSSSCP00000027094.2, ENSSSCT00000027481.2
      Conserved Domains (4) summary
      pfam03992
      Location:290 → 363
      ABM; Antibiotic biosynthesis monooxygenase
      pfam13202
      Location:69 → 91
      EF-hand_5; EF hand
      cd15898
      Location:72 → 98
      EFh_PI-PLC; EF-hand motif [structural motif]
      cl28895
      Location:72 → 126
      EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes

    RNA

    1. XR_002339852.1 RNA Sequence

    2. XR_002339853.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials