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    lsm10 LSM10, U7 small nuclear RNA associated [ Danio rerio (zebrafish) ]

    Gene ID: 100536270, updated on 2-Nov-2024

    Summary

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    Official Symbol
    lsm10provided by ZNC
    Official Full Name
    LSM10, U7 small nuclear RNA associatedprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090508-7
    See related
    Ensembl:ENSDARG00000101222 AllianceGenome:ZFIN:ZDB-GENE-090508-7
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable RNA binding activity. Orthologous to human LSM10 (LSM10, U7 small nuclear RNA associated). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See lsm10 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3840993..3843330)
    105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3900081..3902442)

    Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH-type containing 12Ab Neighboring gene 1-phosphatidylinositol phosphodiesterase-like Neighboring gene organic solute carrier partner 1a Neighboring gene eva-1 homolog Bb (C. elegans) Neighboring gene thyroid hormone receptor associated protein 3b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. The evolution and immunomodulatory role of Zc3h12 proteins in zebrafish (Danio rerio). Yang S, et al. Int J Biol Macromol, 2023 Jun 1. PMID 37001786
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    U7 snRNA-associated Sm-like protein LSm10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386623.1 → NP_001373552.1  U7 snRNA-associated Sm-like protein LSm10

      Status: VALIDATED

      Source sequence(s)
      CT030005
      UniProtKB/TrEMBL
      A0A0R4IV27, A0A8M2BLE8
      Related
      ENSDARP00000138931.1, ENSDART00000172305.2
      Conserved Domains (1) summary
      cd01733
      Location:8 → 85
      LSm10; Like-Sm protein 10

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007130.7 Reference GRCz11 Primary Assembly

      Range
      3840993..3843330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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