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    KCNQ4 potassium voltage-gated channel subfamily Q member 4 [ Sus scrofa (pig) ]

    Gene ID: 100526228, updated on 17-Aug-2024

    Summary

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    Official Symbol
    KCNQ4provided by VGNC
    Official Full Name
    potassium voltage-gated channel subfamily Q member 4provided by VGNC
    Primary source
    VGNC:VGNC:89383
    See related
    Ensembl:ENSSSCG00000003975
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in psoas major muscle (RPKM 14.9), subcutaneous adipose (RPKM 5.3) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See KCNQ4 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (170346135..170401534, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (157393601..157448978, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106507677 Neighboring gene Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 Neighboring gene uncharacterized LOC106507678 Neighboring gene nuclear transcription factor Y subunit gamma Neighboring gene microRNA mir-30c-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables voltage-gated potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    potassium voltage-gated channel subfamily KQT member 4
    Names
    potassium voltage-gated channel, KQT-like subfamily, member 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      170346135..170401534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021096972.1 → XP_020952631.1  potassium voltage-gated channel subfamily KQT member 4 isoform X4

      UniProtKB/TrEMBL
      A0A4X1W7S5, A0A5G2RJN5, A0A8D1CNP0, A0A8D1LMP2
      Related
      ENSSSCP00000072124.1, ENSSSCT00000078539.2
      Conserved Domains (2) summary
      pfam00520
      Location:98 → 330
      Ion_trans; Ion transport protein
      pfam03520
      Location:414 → 593
      KCNQ_channel; KCNQ voltage-gated potassium channel

    2. XM_021096971.1 → XP_020952630.1  potassium voltage-gated channel subfamily KQT member 4 isoform X3

      UniProtKB/TrEMBL
      A0A8D1CNP0
      Conserved Domains (2) summary
      pfam00520
      Location:98 → 330
      Ion_trans; Ion transport protein
      pfam03520
      Location:429 → 608
      KCNQ_channel; KCNQ voltage-gated potassium channel

    3. XM_003128110.6 → XP_003128158.4  potassium voltage-gated channel subfamily KQT member 4 isoform X2

      UniProtKB/TrEMBL
      A0A4X1W6B6, A0A8D0Z3V0, A0A8D1EYT7, F1SF76
      Related
      ENSSSCP00000004297.3, ENSSSCT00000004397.4
      Conserved Domains (2) summary
      pfam00520
      Location:98 → 330
      Ion_trans; Ion transport protein
      pfam03520
      Location:468 → 647
      KCNQ_channel; KCNQ voltage-gated potassium channel

    4. XM_021096970.1 → XP_020952629.1  potassium voltage-gated channel subfamily KQT member 4 isoform X1

      UniProtKB/TrEMBL
      A0A8D0Z3V0
      Conserved Domains (2) summary
      pfam00520
      Location:98 → 330
      Ion_trans; Ion transport protein
      pfam03520
      Location:483 → 662
      KCNQ_channel; KCNQ voltage-gated potassium channel

    5. XM_021096973.1 → XP_020952632.1  potassium voltage-gated channel subfamily KQT member 4 isoform X5

      UniProtKB/TrEMBL
      A0A8D1XFQ6
      Conserved Domains (2) summary
      pfam00520
      Location:2 → 192
      Ion_trans; Ion transport protein
      pfam03520
      Location:345 → 524
      KCNQ_channel; KCNQ voltage-gated potassium channel
    Nucleotide Protein
    Heading Accession and Version

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