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    GPT glutamic--pyruvic transaminase [ Sus scrofa (pig) ]

    Gene ID: 100524618, updated on 8-Mar-2024

    Summary

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    Gene symbol
    GPT
    Gene description
    glutamic--pyruvic transaminase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    AAT1; ALT1; GPT1
    Expression
    Broad expression in subcutaneous adipose (RPKM 11.3), psoas major muscle (RPKM 11.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See GPT in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 4 NC_010446.5 (297747..302498, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 4 NC_010446.4 (388746..393520, complement)

    Chromosome 4 - NC_010446.5Genomic Context describing neighboring genes Neighboring gene RecQ like helicase 4 Neighboring gene major facilitator superfamily domain containing 3 Neighboring gene protein phosphatase 1 regulatory subunit 16A Neighboring gene forkhead box H1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-alanine:2-oxoglutarate aminotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alanine aminotransferase 1
    Names
    Alanine aminotransferase 1
    GPT 1
    Glutamate pyruvate transaminase 1
    Glutamic--alanine transaminase 1
    Glutamic--pyruvic transaminase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010446.5 Reference Sscrofa11.1 Primary Assembly

      Range
      297747..302498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005662806.3 → XP_005662863.1  alanine aminotransferase 1 isoform X4

      UniProtKB/TrEMBL
      A0A8D0MH20
      Conserved Domains (1) summary
      cl27741
      Location:19 → 496
      Aminotran_1_2; Aminotransferase class I and II

    2. XM_021090479.1 → XP_020946138.1  alanine aminotransferase 1 isoform X4

      UniProtKB/TrEMBL
      A0A8D0MH20
      Conserved Domains (1) summary
      cl27741
      Location:19 → 496
      Aminotran_1_2; Aminotransferase class I and II

    3. XM_005662808.3 → XP_005662865.1  alanine aminotransferase 1 isoform X3

      Conserved Domains (2) summary
      cd00609
      Location:111 → 502
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PTZ00377
      Location:35 → 512
      PTZ00377; alanine aminotransferase; Provisional

    4. XM_021090477.1 → XP_020946136.1  alanine aminotransferase 1 isoform X2

      Conserved Domains (1) summary
      cl27741
      Location:35 → 555
      Aminotran_1_2; Aminotransferase class I and II

    5. XM_013996392.2 → XP_013851846.1  alanine aminotransferase 1 isoform X4

      UniProtKB/TrEMBL
      A0A8D0MH20
      Conserved Domains (1) summary
      cl27741
      Location:19 → 496
      Aminotran_1_2; Aminotransferase class I and II

    6. XM_003125440.4 → XP_003125488.2  alanine aminotransferase 1 isoform X1

      Conserved Domains (2) summary
      cd00609
      Location:154 → 545
      AAT_like; Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine ...
      PTZ00377
      Location:78 → 555
      PTZ00377; alanine aminotransferase; Provisional

    7. XM_013996394.2 → XP_013851848.1  alanine aminotransferase 1 isoform X4

      UniProtKB/TrEMBL
      A0A8D0MH20
      Conserved Domains (1) summary
      cl27741
      Location:19 → 496
      Aminotran_1_2; Aminotransferase class I and II
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P13191.1 GenPept UniProtKB/Swiss-Prot:P13191

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