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    RFLNB refilin B [ Sus scrofa (pig) ]

    Gene ID: 100524216, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RFLNBprovided by VGNC
    Official Full Name
    refilin Bprovided by VGNC
    Primary source
    VGNC:VGNC:92239
    See related
    Ensembl:ENSSSCG00000038618
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in heart (RPKM 8.4), psoas major muscle (RPKM 7.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See RFLNB in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (47307657..47316652)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (49516707..49525696, complement)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene cytochrome c pseudogene Neighboring gene VPS53 subunit of GARP complex Neighboring gene rabphilin 3A like (without C2 domains) Neighboring gene ligand of ATE1 Neighboring gene uncharacterized LOC110256071

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables filamin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of bone mineralization involved in bone maturation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of chondrocyte development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in skeletal system morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament bundle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    refilin-B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      47307657..47316652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003131818.4 → XP_003131866.1  refilin-B

      UniProtKB/TrEMBL
      A0A287AN30, A0A8D1DMD9, A0A8D1IKY4
      Related
      ENSSSCP00000045463.1, ENSSSCT00000040756.3
      Conserved Domains (1) summary
      pfam15068
      Location:1 → 207
      FAM101; FAM101 family
    Nucleotide Protein
    Heading Accession and Version

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