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    PIGF phosphatidylinositol glycan anchor biosynthesis class F [ Sus scrofa (pig) ]

    Gene ID: 100524018, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PIGFprovided by VGNC
    Official Full Name
    phosphatidylinositol glycan anchor biosynthesis class Fprovided by VGNC
    Primary source
    VGNC:VGNC:98193
    See related
    Ensembl:ENSSSCG00000008440
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in heart (RPKM 26.1), psoas major muscle (RPKM 19.4) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See PIGF in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (93925886..93973531)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (100009993..100057923)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260144 Neighboring gene suppressor of cytokine signaling 5 Neighboring gene HD domain-containing protein 2-like Neighboring gene CXXC repeat containing interactor of PDZ3 domain Neighboring gene ras homolog family member Q Neighboring gene ATPase H+ transporting V1 subunit E2 Neighboring gene uncharacterized LOC110260021 Neighboring gene transmembrane protein 247 Neighboring gene endothelial PAS domain protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol-glycan biosynthesis class F protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      93925886..93973531
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003125167.6 → XP_003125215.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X1

      UniProtKB/TrEMBL
      A0A4X1SH27, A0A4X1SHS0, A0A5G2QIK2, A0A8D0IJZ3, A0A8D1REQ0, F1S5M1
      Related
      ENSSSCP00000009007.3, ENSSSCT00000009241.4
      Conserved Domains (1) summary
      pfam06699
      Location:27 → 204
      PIG-F; GPI biosynthesis protein family Pig-F

    2. XM_013996176.2 → XP_013851630.1  phosphatidylinositol-glycan biosynthesis class F protein isoform X2

      UniProtKB/TrEMBL
      A0A4X1SHS0, A0A5G2QIK2, A0A8D0IJZ3
      Conserved Domains (1) summary
      pfam06699
      Location:27 → 182
      PIG-F; GPI biosynthesis protein family Pig-F
    Nucleotide Protein
    Heading Accession and Version

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