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    BACH1 BTB domain and CNC homolog 1 [ Sus scrofa (pig) ]

    Gene ID: 100523514, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BACH1provided by VGNC
    Official Full Name
    BTB domain and CNC homolog 1provided by VGNC
    Primary source
    VGNC:VGNC:85741
    See related
    Ensembl:ENSSSCG00000012029
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 9.0), kidney (RPKM 7.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See BACH1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (192656289..192697536)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (203110429..203149469)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene chaperonin containing TCP1 subunit 8 Neighboring gene MAP3K7 C-terminal like Neighboring gene glutamate ionotropic receptor kainate type subunit 1 Neighboring gene 60S ribosomal protein L6 pseudogene Neighboring gene TOX high mobility group box family member 4 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription regulator protein BACH1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      192656289..192697536
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021070889.1 → XP_020926548.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    2. XM_021070890.1 → XP_020926549.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    3. XM_021070887.1 → XP_020926546.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Related
      ENSSSCP00000057103.1, ENSSSCT00000056107.3
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    4. XM_021070882.1 → XP_020926541.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    5. XM_021070888.1 → XP_020926547.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    6. XM_021070886.1 → XP_020926545.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    7. XM_021070883.1 → XP_020926542.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    8. XM_021070892.1 → XP_020926551.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    9. XM_021070884.1 → XP_020926543.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    10. XM_021070885.1 → XP_020926544.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain

    11. XM_021070891.1 → XP_020926550.1  transcription regulator protein BACH1

      UniProtKB/TrEMBL
      A0A481CED7, A0A8D0I4C1, A0A8D0PMN1, A0A8D1GCK8
      Conserved Domains (2) summary
      cd14719
      Location:554 → 624
      bZIP_BACH; Basic leucine zipper (bZIP) domain of BTB and CNC homolog (BACH) proteins: a DNA-binding and dimerization domain
      pfam00651
      Location:24 → 129
      BTB; BTB/POZ domain
    Nucleotide Protein
    Heading Accession and Version

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