U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SUN2 Sad1 and UNC84 domain containing 2 [ Sus scrofa (pig) ]

    Gene ID: 100521622, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SUN2provided by VGNC
    Official Full Name
    Sad1 and UNC84 domain containing 2provided by VGNC
    Primary source
    VGNC:VGNC:93619
    See related
    Ensembl:ENSSSCG00000000094
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 67.8), spleen (RPKM 38.5) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SUN2 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (9273136..9293258)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (6516706..6536718)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene neuronal pentraxin receptor Neighboring gene dynein axonemal light chain 4 Neighboring gene GTP binding protein 1 Neighboring gene Josephin domain containing 1 Neighboring gene translocase of outer mitochondrial membrane 22

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-membrane adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear envelope organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of meiotic nuclear membrane microtubule tethering complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    SUN domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      9273136..9293258
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013988192.2 → XP_013843646.1  SUN domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A0B8RT38, A0A287BIL5, A0A4X1VMZ6, A0A8D0NRP8, A0A8D0V9T5
      Related
      ENSSSCP00000080890.1, ENSSSCT00000095925.1
      Conserved Domains (2) summary
      pfam07738
      Location:594 → 728
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl25732
      Location:284 → 505
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_021091478.1 → XP_020947137.1  SUN domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A0B8RT38, A0A287BIL5, A0A4X1VMZ6, A0A8D0NRP8, A0A8D0V9T5
      Conserved Domains (2) summary
      pfam07738
      Location:594 → 728
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl25732
      Location:284 → 505
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_013988193.2 → XP_013843647.1  SUN domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A0B8RT38, A0A287BIL5, A0A4X1VMZ6, A0A8D0NRP8, A0A8D0V9T5
      Conserved Domains (2) summary
      pfam07738
      Location:594 → 728
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl25732
      Location:284 → 505
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_013988194.2 → XP_013843648.1  SUN domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A287BIL5, A0A8D0NRP8, A0A8D0V9T5
      Conserved Domains (2) summary
      pfam07738
      Location:593 → 727
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl25732
      Location:284 → 505
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_021091477.1 → XP_020947136.1  SUN domain-containing protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A0B8RT38, A0A287BIL5, A0A4X1VMZ6, A0A8D0NRP8, A0A8D0V9T5
      Related
      ENSSSCP00000056213.2, ENSSSCT00000043063.2
      Conserved Domains (2) summary
      pfam07738
      Location:594 → 728
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl25732
      Location:284 → 505
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_021091479.1 → XP_020947138.1  SUN domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A287BIL5, A0A8D0NRP8, A0A8D0V9T5
      Conserved Domains (2) summary
      pfam07738
      Location:593 → 727
      Sad1_UNC; Sad1 / UNC-like C-terminal
      cl25732
      Location:284 → 505
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials