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    HOXA11 homeobox A11 [ Sus scrofa (pig) ]

    Gene ID: 100521236, updated on 17-Aug-2024

    Summary

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    Official Symbol
    HOXA11provided by VGNC
    Official Full Name
    homeobox A11provided by VGNC
    Primary source
    VGNC:VGNC:88935
    See related
    Ensembl:ENSSSCG00000016698
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Restricted expression toward kidney (RPKM 5.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See HOXA11 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 18 NC_010460.4 (45388523..45392190)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 18 NC_010460.3 (50021709..50025376)

    Chromosome 18 - NC_010460.4Genomic Context describing neighboring genes Neighboring gene homeobox A13 Neighboring gene uncharacterized LOC102160006 Neighboring gene homeobox A10 Neighboring gene uncharacterized LOC102159438 Neighboring gene homeobox A9 Neighboring gene uncharacterized LOC106506841

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Hoxa11 and Hoxa13 facilitate slow-twitch muscle formation in C2C12 cells and indirectly affect the lipid deposition of 3T3-L1 cells. Lin X, et al. Anim Sci J, 2021 Jan-Dec. PMID 33738916

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Hoxa11 and Hoxa13 facilitate slow-twitch muscle formation in C2C12 cells and indirectly affect the lipid deposition of 3T3-L1 cells.
      Title: Hoxa11 and Hoxa13 facilitate slow-twitch muscle formation in C2C12 cells and indirectly affect the lipid deposition of 3T3-L1 cells.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein Hox-A11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010460.4 Reference Sscrofa11.1 Primary Assembly

      Range
      45388523..45392190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003134850.4 → XP_003134898.2  homeobox protein Hox-A11

      See identical proteins and their annotated locations for XP_003134898.2

      UniProtKB/TrEMBL
      A0A8D0NE02, A0A8D0V4D0, F1SHT7, V9VHL8
      Related
      ENSSSCP00000017688.3, ENSSSCT00000018179.4
      Conserved Domains (2) summary
      pfam00046
      Location:248 → 301
      Homeobox; Homeobox domain
      pfam12045
      Location:26 → 168
      DUF3528; Protein of unknown function (DUF3528)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials