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    AOC2 amine oxidase copper containing 2 [ Sus scrofa (pig) ]

    Gene ID: 100520513, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AOC2provided by VGNC
    Official Full Name
    amine oxidase copper containing 2provided by VGNC
    Primary source
    VGNC:VGNC:85376
    See related
    Ensembl:ENSSSCG00000017384
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in liver (RPKM 8.9), subcutaneous adipose (RPKM 4.5) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See AOC2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (20021987..20027967, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (20236608..20242625, complement)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene membrane primary amine oxidase-like Neighboring gene uncharacterized LOC110256001 Neighboring gene membrane primary amine oxidase Neighboring gene proteasome activator subunit 3 Neighboring gene beclin 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables primary methylamine oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables quinone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in amine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    retina-specific copper amine oxidase
    Names
    amine oxidase, copper containing 2 (retina-specific)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      20021987..20027967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003131393.4 → XP_003131441.2  retina-specific copper amine oxidase

      UniProtKB/TrEMBL
      A0A480WBC5, A0A4X1TX67, F1S1G7
      Related
      ENSSSCP00000018418.3, ENSSSCT00000018923.5
      Conserved Domains (3) summary
      pfam01179
      Location:308 → 716
      Cu_amine_oxid; Copper amine oxidase, enzyme domain
      pfam02727
      Location:62 → 147
      Cu_amine_oxidN2; Copper amine oxidase, N2 domain
      pfam02728
      Location:165 → 263
      Cu_amine_oxidN3; Copper amine oxidase, N3 domain
    Nucleotide Protein
    Heading Accession and Version

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