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    OSR1 odd-skipped related transcription factor 1 [ Sus scrofa (pig) ]

    Gene ID: 100520131, updated on 17-Aug-2024

    Summary

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    Official Symbol
    OSR1provided by VGNC
    Official Full Name
    odd-skipped related transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:91083
    See related
    Ensembl:ENSSSCG00000060496
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in subcutaneous adipose (RPKM 4.8), lung (RPKM 2.1) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See OSR1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (118368471..118765107)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (126839630..126845239)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene matrilin 3 Neighboring gene WD repeat domain 35 Neighboring gene tetratricopeptide repeat domain 32 Neighboring gene uncharacterized LOC106509896 Neighboring gene uncharacterized LOC106509893 Neighboring gene 28S ribosomal protein S21, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in embryo development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in urogenital system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein odd-skipped-related 1
    Names
    odd-skipped related 1
    odd-skipped related transciption factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      118368471..118765107
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021087818.1 → XP_020943477.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain

    2. XM_021087817.1 → XP_020943476.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain

    3. XM_021087812.1 → XP_020943471.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain

    4. XM_021087819.1 → XP_020943478.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain

    5. XM_021087820.1 → XP_020943479.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain

    6. XM_021087814.1 → XP_020943473.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain

    7. XM_021087813.1 → XP_020943472.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Related
      ENSSSCP00000078019.1, ENSSSCT00000102934.1
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain

    8. XM_021087815.1 → XP_020943474.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain

    9. XM_021087816.1 → XP_020943475.1  protein odd-skipped-related 1

      UniProtKB/TrEMBL
      A0A4X1U5K7, A0A8D1KWH7, I3LQZ9
      Conserved Domains (3) summary
      sd00017
      Location:178 → 198
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:176 → 198
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:218 → 241
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
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