GAS6 growth arrest specific 6 [Sus scrofa (pig)] - Gene

Summary

Official Symbol: GAS6provided by VGNC
Official Full Name: growth arrest specific 6provided by VGNC
Primary source: VGNC:VGNC:88358
See related: Ensembl:ENSSSCG00000009565
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Sus scrofa
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Annotation information: Annotation category: partial on reference assembly
Expression: Broad expression in heart (RPKM 88.0), ovary (RPKM 54.6) and 7 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 11

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	Sscrofa11.1 (GCF_000003025.6)	11	NC_010453.5 (78848797..78880733, complement)
105	previous assembly	Sscrofa10.2 (GCF_000003025.5)	11	NC_010453.4 (86582221..86614062, complement)

Chromosome 11 - NC_010453.5 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
BioProject: PRJNA311523
Publication: PMID 27646534
Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The results imply that the GAS6 gene can be considered a potential candidate for meat quality trait selection and fat deposition in pigs.
Title: Characterization of porcine GAS6 cDNA gene and its expression analysis in weaned piglets.

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in extracellular region	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: growth arrest-specific protein 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001315742.1 → NP_001302671.1 growth arrest-specific protein 6 precursor

Status: PROVISIONAL

Source sequence(s)

KC526197

UniProtKB/TrEMBL

A0A8D1BYA0, M1TFP4

Related

ENSSSCP00000048949.3, ENSSSCT00000059625.3

Conserved Domains (7) summary

smart00069
Location:28 → 91

GLA; Domain containing Gla (gamma-carboxyglutamate) residues

smart00179
Location:196 → 226

EGF_CA; Calcium-binding EGF-like domain

cd00054
Location:117 → 152

EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...

cd00110
Location:297 → 449

LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

pfam02210
Location:512 → 649

Laminin_G_2; Laminin G domain

pfam14670
Location:159 → 194

FXa_inhibition; Coagulation Factor Xa inhibitory site

cl00057
Location:231 → 272

vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...