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    BCAT1 branched chain amino acid transaminase 1 [ Sus scrofa (pig) ]

    Gene ID: 100518784, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BCAT1provided by VGNC
    Official Full Name
    branched chain amino acid transaminase 1provided by VGNC
    Primary source
    VGNC:VGNC:85773
    See related
    Ensembl:ENSSSCG00000029163
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in kidney (RPKM 5.8), lung (RPKM 5.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See BCAT1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (48814212..48925632)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (52534770..52624453)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene lymphoid-restricted membrane protein Neighboring gene uncharacterized LOC110260722 Neighboring gene glutaredoxin-1 pseudogene Neighboring gene uncharacterized LOC102166782 Neighboring gene SRY-box transcription factor 5 Neighboring gene microRNA mir-9827

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables branched-chain-amino-acid transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-leucine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in L-valine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    branched-chain-amino-acid aminotransferase, cytosolic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      48814212..48925632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021092209.1 → XP_020947868.1  branched-chain-amino-acid aminotransferase, cytosolic isoform X2

      UniProtKB/TrEMBL
      A0A287AWV7, A0A4X1VHV6, A0A8D1KWL8, A0A8D1PNW1, K9J4N3
      Related
      ENSSSCP00000048630.1, ENSSSCT00000037021.3
      Conserved Domains (1) summary
      cl25388
      Location:33 → 378
      PRK13357; branched-chain amino acid aminotransferase; Provisional

    2. XM_021092208.1 → XP_020947867.1  branched-chain-amino-acid aminotransferase, cytosolic isoform X1

      UniProtKB/TrEMBL
      A0A5G2QR48
      Related
      ENSSSCP00000054243.1, ENSSSCT00000054392.1
      Conserved Domains (1) summary
      cl25388
      Location:108 → 453
      PRK13357; branched-chain amino acid aminotransferase; Provisional

    3. XM_021092210.1 → XP_020947869.1  branched-chain-amino-acid aminotransferase, cytosolic isoform X3

      UniProtKB/TrEMBL
      A0A287AGX5, A0A4X1VGU3, A0A8D1HKV8, A0A8D1MG22
      Related
      ENSSSCP00000043122.1, ENSSSCT00000058014.2
      Conserved Domains (1) summary
      cl25388
      Location:32 → 377
      PRK13357; branched-chain amino acid aminotransferase; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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