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    RACGAP1 Rac GTPase activating protein 1 [ Sus scrofa (pig) ]

    Gene ID: 100517651, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RACGAP1provided by VGNC
    Official Full Name
    Rac GTPase activating protein 1provided by VGNC
    Primary source
    VGNC:VGNC:92050
    See related
    Ensembl:ENSSSCG00000000217
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 14.3), spleen (RPKM 12.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See RACGAP1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (15894314..15943619)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (16400485..16403961)

    Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene aquaporin 5 Neighboring gene aquaporin 6 Neighboring gene acid sensing ion channel subunit 1 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rac GTPase-activating protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

      Range
      15894314..15943619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021091634.1 → XP_020947293.1  rac GTPase-activating protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1WCI9, A0A8D1RH02, F1SH88
      Conserved Domains (3) summary
      cd00029
      Location:287 → 335
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      cd04382
      Location:346 → 539
      RhoGAP_MgcRacGAP; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is ...
      cl25732
      Location:13 → 105
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_021091635.1 → XP_020947294.1  rac GTPase-activating protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1WCI9, A0A8D1RH02, F1SH88
      Related
      ENSSSCP00000000230.5, ENSSSCT00000000233.5
      Conserved Domains (3) summary
      cd00029
      Location:287 → 335
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      cd04382
      Location:346 → 539
      RhoGAP_MgcRacGAP; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is ...
      cl25732
      Location:13 → 105
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_021091633.1 → XP_020947292.1  rac GTPase-activating protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1WCI9, A0A8D1RH02, F1SH88
      Conserved Domains (3) summary
      cd00029
      Location:287 → 335
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      cd04382
      Location:346 → 539
      RhoGAP_MgcRacGAP; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is ...
      cl25732
      Location:13 → 105
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_021091637.1 → XP_020947296.1  rac GTPase-activating protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D1AY23, A0A8D1NAC6
      Conserved Domains (2) summary
      cd00029
      Location:194 → 242
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      cd04382
      Location:253 → 446
      RhoGAP_MgcRacGAP; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is ...

    5. XM_021091636.1 → XP_020947295.1  rac GTPase-activating protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8D1AY23, A0A8D1NAC6
      Conserved Domains (2) summary
      cd00029
      Location:194 → 242
      C1; Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second ...
      cd04382
      Location:253 → 446
      RhoGAP_MgcRacGAP; RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is ...
    Nucleotide Protein
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