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    GAPDHS glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [ Sus scrofa (pig) ]

    Gene ID: 100517097, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GAPDHSprovided by VGNC
    Official Full Name
    glyceraldehyde-3-phosphate dehydrogenase, spermatogenicprovided by VGNC
    Primary source
    VGNC:VGNC:88345
    See related
    Ensembl:ENSSSCG00000002888
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in kidney (RPKM 1.2), spleen (RPKM 1.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See GAPDHS in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (44968965..44978992)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (40367766..40377606, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene dermokine Neighboring gene suprabasin Neighboring gene uncharacterized LOC110261280 Neighboring gene transmembrane protein 147 Neighboring gene ATPase H+/K+ transporting subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glucose metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: glyceraldehyde-3-phosphate dehydrogenase, testis-specific

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      44968965..44978992
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021097231.1 → XP_020952890.1  LOW QUALITY PROTEIN: glyceraldehyde-3-phosphate dehydrogenase, testis-specific

      UniProtKB/TrEMBL
      A0A4X1THF8
      Related
      ENSSSCP00000003110.5, ENSSSCT00000003191.5
      Conserved Domains (1) summary
      cl27764
      Location:74 → 399
      Gp_dh_N; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
    Nucleotide Protein
    Heading Accession and Version

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