U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [ Sus scrofa (pig) ]

    Gene ID: 100515330, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SMARCAD1provided by VGNC
    Official Full Name
    SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1provided by VGNC
    Primary source
    VGNC:VGNC:93229
    See related
    Ensembl:ENSSSCG00000009193
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 6.4), ovary (RPKM 5.9) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SMARCAD1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (125410221..125488471, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (134696468..134777487, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene PDZ and LIM domain 5 Neighboring gene hematopoietic prostaglandin D synthase Neighboring gene 40S ribosomal protein S14 Neighboring gene uncharacterized LOC106507805

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      125410221..125488471 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005666984.3 → XP_005667041.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      See identical proteins and their annotated locations for XP_005667041.1

      UniProtKB/TrEMBL
      A0A4X1UE56, A0A8D0S4S4, A0A8D0USB8
      Conserved Domains (3) summary
      cd00046
      Location:519 → 661
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:502 → 789
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:855 → 969
      Helicase_C; Helicase conserved C-terminal domain

    2. XM_005666985.3 → XP_005667042.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1

      See identical proteins and their annotated locations for XP_005667042.1

      UniProtKB/TrEMBL
      A0A4X1UE56, A0A8D0S4S4, A0A8D0USB8
      Related
      ENSSSCP00000032164.2, ENSSSCT00000054734.2
      Conserved Domains (3) summary
      cd00046
      Location:519 → 661
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:502 → 789
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:855 → 969
      Helicase_C; Helicase conserved C-terminal domain

    3. XM_021101760.1 → XP_020957419.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X2

      Conserved Domains (1) summary
      cl26465
      Location:46 → 577
      SNF2_N; SNF2 family N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials