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    SLC25A21 solute carrier family 25 member 21 [ Sus scrofa (pig) ]

    Gene ID: 100515265, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC25A21provided by VGNC
    Official Full Name
    solute carrier family 25 member 21provided by VGNC
    Primary source
    VGNC:VGNC:98320
    See related
    Ensembl:ENSSSCG00000039317
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in kidney (RPKM 2.6), liver (RPKM 1.0) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SLC25A21 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (62808126..63326634)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (68085398..68235406)

    Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106504447 Neighboring gene mirror-image polydactyly 1 Neighboring gene SUMO-activating enzyme subunit 2 pseudogene Neighboring gene paired box 9 Neighboring gene uncharacterized LOC110261715 Neighboring gene NK2 homeobox 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mitochondrial 2-oxodicarboxylate carrier

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

      Range
      62808126..63326634
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021099142.1 → XP_020954801.1  mitochondrial 2-oxodicarboxylate carrier isoform X2

      UniProtKB/TrEMBL
      A0A8D0TKI8
      Conserved Domains (1) summary
      pfam00153
      Location:1 → 75
      Mito_carr; Mitochondrial carrier protein

    2. XM_021099143.1 → XP_020954802.1  mitochondrial 2-oxodicarboxylate carrier isoform X2

      UniProtKB/TrEMBL
      A0A8D0TKI8
      Conserved Domains (1) summary
      pfam00153
      Location:1 → 75
      Mito_carr; Mitochondrial carrier protein

    3. XM_021099141.1 → XP_020954800.1  mitochondrial 2-oxodicarboxylate carrier isoform X1

      UniProtKB/TrEMBL
      A0A287BCR8, A0A4X1TAY4
      Conserved Domains (1) summary
      pfam00153
      Location:15 → 105
      Mito_carr; Mitochondrial carrier protein

    4. XM_021099146.1 → XP_020954805.1  mitochondrial 2-oxodicarboxylate carrier isoform X3

      UniProtKB/TrEMBL
      A0A287BCR8, A0A481AL49, A0A4X1TAY4
      Conserved Domains (1) summary
      pfam00153
      Location:15 → 105
      Mito_carr; Mitochondrial carrier protein

    5. XM_021099145.1 → XP_020954804.1  mitochondrial 2-oxodicarboxylate carrier isoform X3

      UniProtKB/TrEMBL
      A0A287BCR8, A0A481AL49, A0A4X1TAY4
      Related
      ENSSSCP00000051655.2, ENSSSCT00000054396.3
      Conserved Domains (1) summary
      pfam00153
      Location:15 → 105
      Mito_carr; Mitochondrial carrier protein

    6. XM_021099148.1 → XP_020954807.1  mitochondrial 2-oxodicarboxylate carrier isoform X4

      UniProtKB/TrEMBL
      A0A287B5T0, A0A287BCR8, A0A4X1TAY4, A0A4X1TDM4, A0A8D0KDI0, A0A8D1AVX3
      Related
      ENSSSCP00000053916.2, ENSSSCT00000060722.3
      Conserved Domains (1) summary
      pfam00153
      Location:15 → 105
      Mito_carr; Mitochondrial carrier protein

    7. XM_021099144.1 → XP_020954803.1  mitochondrial 2-oxodicarboxylate carrier isoform X2

      UniProtKB/TrEMBL
      A0A8D0TKI8
      Conserved Domains (1) summary
      pfam00153
      Location:1 → 75
      Mito_carr; Mitochondrial carrier protein
    Nucleotide Protein
    Heading Accession and Version

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