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    YIF1B Yip1 interacting factor homolog B, membrane trafficking protein [ Sus scrofa (pig) ]

    Gene ID: 100514844, updated on 17-Aug-2024

    Summary

    Official Symbol
    YIF1Bprovided by VGNC
    Official Full Name
    Yip1 interacting factor homolog B, membrane trafficking proteinprovided by VGNC
    Primary source
    VGNC:VGNC:95026
    See related
    Ensembl:ENSSSCG00000002952
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 34.2), heart (RPKM 20.3) and 8 other tissues See more
    Orthologs
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    Genomic context

    See YIF1B in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (47224345..47234342, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (42724736..42735428, complement)

    Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor, Kunitz type 2 Neighboring gene uncharacterized LOC102167359 Neighboring gene chromosome 6 C19orf33 homolog Neighboring gene potassium two pore domain channel subfamily K member 6 Neighboring gene cation channel sperm associated auxiliary subunit gamma

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001245006.1NP_001231935.1  protein YIF1B

      Status: VALIDATED

      Source sequence(s)
      AK237080
      UniProtKB/TrEMBL
      A0A480QFX9, A0A8D1YEI8
      Related
      ENSSSCP00000078467.1, ENSSSCT00000105116.1
      Conserved Domains (1) summary
      pfam03878
      Location:75302
      YIF1; YIF1

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

      Range
      47224345..47234342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005664536.3XP_005664593.2  protein YIF1B isoform X1

      UniProtKB/TrEMBL
      A0A287BMD2, A0A480KUD3, A0A8D0QG88, A0A8D1YEI8
      Related
      ENSSSCP00000057333.2, ENSSSCT00000062105.3
      Conserved Domains (1) summary
      pfam03878
      Location:72306
      YIF1
    2. XM_005664537.3XP_005664594.2  protein YIF1B isoform X2

      UniProtKB/TrEMBL
      A0A5G2RAL7, A0A8D1SHN7, A0A8D1YFB2
      Related
      ENSSSCP00000073375.2, ENSSSCT00000090048.2
      Conserved Domains (1) summary
      pfam03878
      Location:59293
      YIF1