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    MKS1 MKS transition zone complex subunit 1 [ Sus scrofa (pig) ]

    Gene ID: 100514538, updated on 17-Aug-2024

    Summary

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    Official Symbol
    MKS1provided by VGNC
    Official Full Name
    MKS transition zone complex subunit 1provided by VGNC
    Primary source
    VGNC:VGNC:96589
    See related
    Ensembl:ENSSSCG00000017635
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in ovary (RPKM 7.6), kidney (RPKM 4.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See MKS1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 12 NC_010454.4 (34499139..34512191, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 12 NC_010454.3 (36299683..36312762)

    Chromosome 12 - NC_010454.4Genomic Context describing neighboring genes Neighboring gene olfactory receptor 4D2-like Neighboring gene eosinophil peroxidase Neighboring gene lactoperoxidase Neighboring gene myeloperoxidase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MKS complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: Meckel syndrome type 1 protein
    Names
    Meckel syndrome, type 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010454.4 Reference Sscrofa11.1 Primary Assembly

      Range
      34499139..34512191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003131643.6 → XP_003131691.2  LOW QUALITY PROTEIN: Meckel syndrome type 1 protein

      UniProtKB/TrEMBL
      A0A4X1SK90
      Related
      ENSSSCP00000018689.4, ENSSSCT00000019197.6
      Conserved Domains (1) summary
      pfam07162
      Location:319 → 492
      B9-C2; Ciliary basal body-associated, B9 protein
    Nucleotide Protein
    Heading Accession and Version

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