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    MAP1LC3C microtubule associated protein 1 light chain 3 gamma [ Sus scrofa (pig) ]

    Gene ID: 100512852, updated on 17-Aug-2024

    Summary

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    Official Symbol
    MAP1LC3Cprovided by VGNC
    Official Full Name
    microtubule associated protein 1 light chain 3 gammaprovided by VGNC
    Primary source
    VGNC:VGNC:95581
    See related
    Ensembl:ENSSSCG00000054590
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See MAP1LC3C in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (15371182..15379067)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (17686532..17693786)

    Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene putative surface protein SACOL0050 Neighboring gene exonuclease 1 Neighboring gene beclin 2 Neighboring gene phospholipase D family member 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to nitrogen starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in autophagosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    microtubule-associated proteins 1A/1B light chain 3C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

      Range
      15371182..15379067
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003130558.4 → XP_003130606.1  microtubule-associated proteins 1A/1B light chain 3C

      UniProtKB/TrEMBL
      A0A287ABF3, A0A8D0IGJ6
      Conserved Domains (1) summary
      cd01611
      Location:13 → 126
      GABARAP; Ubiquitin domain of GABA-receptor-associated protein

    2. XM_013980061.2 → XP_013835515.1  microtubule-associated proteins 1A/1B light chain 3C

      UniProtKB/TrEMBL
      A0A287ABF3, A0A8D0IGJ6
      Related
      ENSSSCP00000078649.1, ENSSSCT00000102838.1
      Conserved Domains (1) summary
      cd01611
      Location:13 → 126
      GABARAP; Ubiquitin domain of GABA-receptor-associated protein
    Nucleotide Protein
    Heading Accession and Version

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