U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    ST6GAL2 ST6 beta-galactoside alpha-2,6-sialyltransferase 2 [ Sus scrofa (pig) ]

    Gene ID: 100512775, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ST6GAL2provided by VGNC
    Official Full Name
    ST6 beta-galactoside alpha-2,6-sialyltransferase 2provided by VGNC
    Primary source
    VGNC:VGNC:93508
    See related
    Ensembl:ENSSSCG00000008141
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in ovary (RPKM 8.8), mixtures (RPKM 1.4) and 2 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ST6GAL2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (48648111..48723779)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (50724373..50795091, complement)

    Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene sulfotransferase family 1C member 3 Neighboring gene uncharacterized LOC102164452 Neighboring gene solute carrier family 5 member 7 Neighboring gene translation initiation factor IF-2-like Neighboring gene transfer RNA serine (anticodon AGA) Neighboring gene UDP-glucuronate decarboxylase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sialyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    beta-galactoside alpha-2,6-sialyltransferase 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

      Range
      48648111..48723779
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021087112.1 → XP_020942771.1  beta-galactoside alpha-2,6-sialyltransferase 2

      UniProtKB/TrEMBL
      A0A480E8L5, A0A4X1VUQ1, A0A8D0NHC3, A0A8D1HNI0
      Conserved Domains (1) summary
      pfam00777
      Location:256 → 491
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    2. XM_003124855.4 → XP_003124903.1  beta-galactoside alpha-2,6-sialyltransferase 2

      See identical proteins and their annotated locations for XP_003124903.1

      UniProtKB/TrEMBL
      A0A480E8L5, A0A4X1VUQ1, A0A8D0NHC3, A0A8D1HNI0
      Conserved Domains (1) summary
      pfam00777
      Location:256 → 491
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    3. XM_005662348.3 → XP_005662405.1  beta-galactoside alpha-2,6-sialyltransferase 2

      See identical proteins and their annotated locations for XP_005662405.1

      UniProtKB/TrEMBL
      A0A480E8L5, A0A4X1VUQ1, A0A8D0NHC3, A0A8D1HNI0
      Related
      ENSSSCP00000072961.1, ENSSSCT00000084634.2
      Conserved Domains (1) summary
      pfam00777
      Location:256 → 491
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

    4. XM_013995897.2 → XP_013851351.1  beta-galactoside alpha-2,6-sialyltransferase 2

      UniProtKB/TrEMBL
      A0A480E8L5, A0A4X1VUQ1, A0A8D0NHC3, A0A8D1HNI0
      Conserved Domains (1) summary
      pfam00777
      Location:256 → 491
      Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.