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    DNAJA1 DnaJ heat shock protein family (Hsp40) member A1 [ Sus scrofa (pig) ]

    Gene ID: 100512008, updated on 17-Aug-2024

    Summary

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    Official Symbol
    DNAJA1provided by VGNC
    Official Full Name
    DnaJ heat shock protein family (Hsp40) member A1provided by VGNC
    Primary source
    VGNC:VGNC:108270
    See related
    Ensembl:ENSSSCG00000011000
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in ovary (RPKM 98.0), kidney (RPKM 89.8) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See DNAJA1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 10 NC_010452.4 (33432529..33445556, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 10 NC_010452.3 (37687721..37699598, complement)

    Chromosome 10 - NC_010452.4Genomic Context describing neighboring genes Neighboring gene beta-1,4-galactosyltransferase 1 Neighboring gene SMU1 DNA replication regulator and spliceosomal factor Neighboring gene aprataxin Neighboring gene ORM1-like protein 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables Hsp70 protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dnaJ homolog subfamily A member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001244163.1 → NP_001231092.1  dnaJ homolog subfamily A member 1

      Status: PROVISIONAL

      Source sequence(s)
      AK351953
      UniProtKB/TrEMBL
      A0A4X1UQS4
      Conserved Domains (4) summary
      cd10719
      Location:134 → 199
      DnaJ_zf; Zinc finger domain of DnaJ and HSP40
      cd10747
      Location:105 → 331
      DnaJ_C; C-terminal substrate binding domain of DnaJ and HSP40
      PTZ00037
      Location:2 → 394
      PTZ00037; DnaJ_C chaperone protein; Provisional
      pfam00226
      Location:6 → 65
      DnaJ; DnaJ domain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010452.4 Reference Sscrofa11.1 Primary Assembly

      Range
      33432529..33445556 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021063987.1 → XP_020919646.1  dnaJ homolog subfamily A member 1 isoform X1

      UniProtKB/TrEMBL
      A0A4X1UQS4, A0A4X1UQT0, A0A8D1WV30, F1SE73
      Related
      ENSSSCP00000011734.2, ENSSSCT00000012042.4
      Conserved Domains (1) summary
      PTZ00037
      Location:2 → 394
      PTZ00037; DnaJ_C chaperone protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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