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    SLC36A4 solute carrier family 36 member 4 [ Sus scrofa (pig) ]

    Gene ID: 100511947, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC36A4provided by VGNC
    Official Full Name
    solute carrier family 36 member 4provided by VGNC
    Primary source
    VGNC:VGNC:93091
    See related
    Ensembl:ENSSSCG00000024933
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in lung (RPKM 4.1), subcutaneous adipose (RPKM 3.8) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See SLC36A4 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (25639370..25689177, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (28983529..29033251, complement)

    Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S25 pseudogene Neighboring gene melatonin receptor 1B Neighboring gene deuterosome assembly protein 1 Neighboring gene cytochrome c oxidase subunit 6C-like Neighboring gene uncharacterized LOC110255415

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Single step genome-wide association studies based on genotyping by sequence data reveals novel loci for the litter traits of domestic pigs. Wu P, et al. Genomics, 2018 May. PMID 28943389
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SLC36A4 is associated with LWB (litter weight born alive).
      Title: Single step genome-wide association studies based on genotyping by sequence data reveals novel loci for the litter traits of domestic pigs.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-alanine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-proline transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-alanine transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in amino acid transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in vacuolar membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proton-coupled amino acid transporter 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

      Range
      25639370..25689177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005667225.3 → XP_005667282.2  proton-coupled amino acid transporter 4 isoform X1

      UniProtKB/TrEMBL
      A0A480EJB7, A0A4X1TWC3, A0A8D1WH29, I3LFE6
      Related
      ENSSSCP00000022788.3, ENSSSCT00000023503.3
      Conserved Domains (1) summary
      cl00456
      Location:96 → 510
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    2. XM_013979268.2 → XP_013834722.1  proton-coupled amino acid transporter 4 isoform X3

      Conserved Domains (1) summary
      cl00456
      Location:15 → 337
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    3. XM_021062637.1 → XP_020918296.1  proton-coupled amino acid transporter 4 isoform X2

      UniProtKB/TrEMBL
      A0A4X1TWC3, A0A5G2QPX8, A0A8D0Q4R1, A0A8D1WHS5, I3LFE6
      Related
      ENSSSCP00000066780.1, ENSSSCT00000078849.1
      Conserved Domains (1) summary
      cl00456
      Location:39 → 453
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials