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    BDH1 3-hydroxybutyrate dehydrogenase 1 [ Sus scrofa (pig) ]

    Gene ID: 100511473, updated on 17-Aug-2024

    Summary

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    Official Symbol
    BDH1provided by VGNC
    Official Full Name
    3-hydroxybutyrate dehydrogenase 1provided by VGNC
    Primary source
    VGNC:VGNC:85792
    See related
    Ensembl:ENSSSCG00000024109
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Biased expression in liver (RPKM 55.4), mixtures (RPKM 20.7) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See BDH1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (132602372..132647271)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (142184212..142203863)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 2 Neighboring gene apolipoprotein D Neighboring gene uncharacterized LOC106505771 Neighboring gene uncharacterized LOC110256399

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    D-beta-hydroxybutyrate dehydrogenase, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      132602372..132647271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021070089.1 → XP_020925748.1  D-beta-hydroxybutyrate dehydrogenase, mitochondrial

      UniProtKB/TrEMBL
      A0A4X1U1J6, A0A8D1N4U0, A0A8D1XA78, F1SQX8, I3L8N1
      Conserved Domains (1) summary
      cd09805
      Location:59 → 344
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    2. XM_021070091.1 → XP_020925750.1  D-beta-hydroxybutyrate dehydrogenase, mitochondrial

      UniProtKB/TrEMBL
      A0A4X1U1J6, A0A8D1N4U0, A0A8D1XA78, F1SQX8, I3L8N1
      Related
      ENSSSCP00000012603.3, ENSSSCT00000012944.5
      Conserved Domains (1) summary
      cd09805
      Location:59 → 344
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    3. XM_021070088.1 → XP_020925747.1  D-beta-hydroxybutyrate dehydrogenase, mitochondrial

      UniProtKB/TrEMBL
      A0A4X1U1J6, A0A8D1N4U0, A0A8D1XA78, F1SQX8, I3L8N1
      Conserved Domains (1) summary
      cd09805
      Location:59 → 344
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    4. XM_021070090.1 → XP_020925749.1  D-beta-hydroxybutyrate dehydrogenase, mitochondrial

      UniProtKB/TrEMBL
      A0A4X1U1J6, A0A8D1N4U0, A0A8D1XA78, F1SQX8, I3L8N1
      Conserved Domains (1) summary
      cd09805
      Location:59 → 344
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    Nucleotide Protein
    Heading Accession and Version

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