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    SEC61B SEC61 translocon subunit beta [ Sus scrofa (pig) ]

    Gene ID: 100511362, updated on 17-Aug-2024

    Summary

    Official Symbol
    SEC61Bprovided by VGNC
    Official Full Name
    SEC61 translocon subunit betaprovided by VGNC
    Primary source
    VGNC:VGNC:92683
    See related
    Ensembl:ENSSSCG00000038914
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 147.4), liver (RPKM 141.5) and 8 other tissues See more
    Orthologs
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    Genomic context

    See SEC61B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (240985173..240991820)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (269216031..269222679)

    Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene transforming growth factor beta receptor 1 Neighboring gene ALG2 alpha-1,3/1,6-mannosyltransferase Neighboring gene uncharacterized LOC106509214 Neighboring gene nuclear receptor subfamily 4 group A member 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    General protein information

    Preferred Names
    protein transport protein Sec61 subunit beta
    Names
    SEC61 translocon beta subunit
    Sec61 beta subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243825.1NP_001230754.1  protein transport protein Sec61 subunit beta

      See identical proteins and their annotated locations for NP_001230754.1

      Status: VALIDATED

      Source sequence(s)
      AK236961
      UniProtKB/TrEMBL
      A0A287BMU4, A0A4X1SH59, A0A8D1N413
      Related
      ENSSSCP00000057826.1, ENSSSCT00000053146.3
      Conserved Domains (1) summary
      pfam03911
      Location:5491
      Sec61_beta; Sec61beta family

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

      Range
      240985173..240991820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)