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    mir4028 microRNA mir-4028 [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 100498911, updated on 26-Oct-2021

    Summary

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    Gene symbol
    mir4028
    Gene description
    microRNA mir-4028
    See related
    miRBase:MI0015579
    Gene type
    ncRNA
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona
    Also known as
    cin-mir-4028
    Summary
    microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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    Genomic context

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    See mir4028 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) Unplaced Scaffold NW_004190372.2 (41221..41274)

    NW_004190372.2Genomic Context describing neighboring genes Neighboring gene transcription factor HES-4-B Neighboring gene receptor-type tyrosine-protein phosphatase epsilon Neighboring gene cytohesin-1 Neighboring gene engulfment and cell motility protein 2 Neighboring gene uncharacterized LOC108950201

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004190372 Unplaced Scaffold Reference KH Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data. Hendrix D, et al. Genome Biol, 2010. PMID 20370911, Free PMC Article
    2. miRBase: microRNA sequences, targets and gene nomenclature. Griffiths-Jones S, et al. Nucleic Acids Res, 2006 Jan 1. PMID 16381832, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • microRNA 4028

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_034421.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      EAAA01003278

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NW_004190372.2 Reference KH Primary Assembly

      Range
      41221..41274
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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