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    Nps neuropeptide S [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100360071, updated on 2-Nov-2024

    Summary

    Official Symbol
    Npsprovided by RGD
    Official Full Name
    neuropeptide Sprovided by RGD
    Primary source
    RGD:2324597
    See related
    EnsemblRapid:ENSRNOG00000036653 AllianceGenome:RGD:2324597
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Involved in positive regulation of circadian sleep/wake cycle, wakefulness. Predicted to be located in synapse. Used to study morphine dependence. Orthologous to human NPS (neuropeptide S). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
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    Genomic context

    See Nps in Genome Data Viewer
    Location:
    1q41
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (199505772..199510915)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (190077040..190080821)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (207508414..207512195)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene dedicator of cyto-kinesis 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ubiquitin-conjugating enzyme E2 L3 pseudogene Neighboring gene uncharacterized LOC102551753 Neighboring gene keratin-associated protein 5-1-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271113.1NP_001258042.1  neuropeptide S precursor

      See identical proteins and their annotated locations for NP_001258042.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/Swiss-Prot
      P0C0P7
      Related
      ENSRNOP00000051780.2, ENSRNOT00000054896.4
      Conserved Domains (1) summary
      pfam14993
      Location:2488
      Neuropeptide_S; Neuropeptide S precursor protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      199505772..199510915
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063281241.1XP_063137311.1  neuropeptide S isoform X1