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    C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100359047, updated on 8-Mar-2024

    Summary

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    Gene symbol
    C1GALT1
    Gene description
    core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
    See related
    Ensembl:ENSOCUG00000026002
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See C1GALT1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 10 NC_067383.1 (28398792..28441910, complement)

    Chromosome 10 - NC_067383.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127492622 Neighboring gene uncharacterized LOC127492623 Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene tachykinin precursor 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067383.1 Chromosome 10 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in O-glycan processing, core 1 IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067383.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      28398792..28441910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051852948.1 → XP_051708908.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    2. XM_051852950.1 → XP_051708910.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

      UniProtKB/TrEMBL
      G1U486

    3. XM_008261702.3 → XP_008259924.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

      See identical proteins and their annotated locations for XP_008259924.1

      UniProtKB/TrEMBL
      G1U486
      Conserved Domains (1) summary
      cl21608
      Location:107 → 248
      Galactosyl_T; Galactosyltransferase

    4. XM_008261701.3 → XP_008259923.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

      See identical proteins and their annotated locations for XP_008259923.1

      UniProtKB/TrEMBL
      G1U486
      Related
      ENSOCUP00000024205.1
      Conserved Domains (1) summary
      cl21608
      Location:107 → 248
      Galactosyl_T; Galactosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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