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    SMC6 structural maintenance of chromosomes 6 [ Oryctolagus cuniculus (rabbit) ]

    Gene ID: 100354764, updated on 8-Mar-2024

    Summary

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    Gene symbol
    SMC6
    Gene description
    structural maintenance of chromosomes 6
    See related
    Ensembl:ENSOCUG00000017307
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryctolagus cuniculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Leporidae; Oryctolagus
    Orthologs
    human mouse all
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    Genomic context

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    See SMC6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2023_02 current UM_NZW_1.0 (GCF_009806435.1) 2 NC_067375.1 (166937404..167037256, complement)

    Chromosome 2 - NC_067375.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127489157 Neighboring gene visinin like 1 Neighboring gene GEN1 Holliday junction 5' flap endonuclease Neighboring gene uncharacterized LOC127489182

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_067375.1 Chromosome 2 Reference UM_NZW_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables damaged DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Smc5-Smc6 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in site of double-strand break IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    structural maintenance of chromosomes protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_009806435.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UM_NZW_1.0 Primary Assembly

    Genomic

    1. NC_067375.1 Reference UM_NZW_1.0 Primary Assembly

      Range
      166937404..167037256 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_051840197.1 → XP_051696157.1  structural maintenance of chromosomes protein 6 isoform X1

    2. XM_051840208.1 → XP_051696168.1  structural maintenance of chromosomes protein 6 isoform X1

    3. XM_051840235.1 → XP_051696195.1  structural maintenance of chromosomes protein 6 isoform X2

    4. XM_051840227.1 → XP_051696187.1  structural maintenance of chromosomes protein 6 isoform X1

    5. XM_051840219.1 → XP_051696179.1  structural maintenance of chromosomes protein 6 isoform X1

    6. XM_051840237.1 → XP_051696197.1  structural maintenance of chromosomes protein 6 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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